Hi again,
Thanks for your quick replies but I think I made myself not clear. here
is what I'm doing:
1) superpose proteinA.pdb onto proteinB.pdb : works, but gives out
proteinA_lsq1.pdb with extra empty lines (not the anisou lines ;o) )
2) superpose proteinA_lsq1.pdb onto proteinC.pdb : doesnt work because
proteinA_lsq1.pdb cannot be read
Any ideas?
Even if there is some compatibility issue between CCP4 and windows, I
guess superpose should be able to read its own files, shouldnt it?
Thanks,
Matthias
On 9/26/2011 9:13 PM, Jacob Keller wrote:
I vaguely recall notepad doing something wacky with files in certain
cases...why don't you get the excellent text editor NoteTab Light
[sic] (I use it all the time--free and works great), then take a look
at your files and see whether MS notepad altered the files.
JPK
On Mon, Sep 26, 2011 at 2:42 PM, Matthias Zebisch
<[email protected]> wrote:
Dear CCP4 users,
I am using the ccp4i version 6.2.0 under windows 7. I've come across a
problem with superpose.
The outputfile appears to have additional line feeds (see picture) which,
however are not seen in the windows notepad.
The structure can also be opened in coot and pymol. However, it is not
possible to use it within CCP4, eg. for a subsequent superposition.
Is this problem known to anybody and is there a simple workaround available?
I need to compare hell of a lot of relative domain orientations...
I did not have this problem on a second computer with ccp4 6.1.2. When I
updated to 6.2.0, the situation was as described above.
Any help will be highly appreciated,
Thanks, Matthias
