Usually you put a statistic like this in the tempFactor field (B) and then color by "B-factor" in pymol or similar.
I'm certain there is a facility for filling this entry somewhere. If not, then a fairly trivial server is waiting for someone to create it and claim the glory. Google something like "alignment b-factor" or "clustal b-factor". That's my best guess. James On Dec 7, 2011, at 10:26 PM, Yuri Pompeu wrote: > I once saw a figure showing the protein as surface, but instead of having it > coloured by atom type > or potential, it was shown by percent conservation in the family. Something > like red highly conserved, all the way to white, not conserved at all... > Now, I assume the figure was done by uploading aligned sequnces of several > members of a family, and the colouring > the generated surface accordingly. > Does anyone know a way to do this more elegantly than what I tried doing? > ps. I quit colouring them manually after I remebered my protein was 407 aa > long...
