Try DSSP2PDB. http://structure.usc.edu/dssp2pdb/
It's a perl script. Crossover flame note: I spent a lot of time learning perl and I still don't recommend the language ;-) James On Jan 24, 2012, at 1:57 PM, Ed Pozharski wrote: > I am looking for a program/server that would determine secondary > structure from a pdb file and then output a new pdb file with > HELIX/SHEET records. I have a model for which pymol fails to produce > correct secondary structure. DSSP and STRIDE identify the secondary > structure correctly but I'd need to convert their output myself to > either pdb header or pymol script. So I wonder maybe something like > that already exists. > > Gracias, > > Ed > > > > > -- > "I'd jump in myself, if I weren't so good at whistling." > Julian, King of Lemurs
