This reminds me of stride2pdb in case you want to use more than pymol with your secondary structure assignments:
http://structure.usc.edu/stride2pdb/ James On Jan 24, 2012, at 2:20 PM, Martin Hällberg wrote: > You can try STRIDE2PyMOL: > > http://pldserver1.biochem.queensu.ca/~rlc/work/pymol/stride_ss.py > > /Martin > > On Jan 24, 2012, at 9:57 PM, Ed Pozharski wrote: > >> I am looking for a program/server that would determine secondary >> structure from a pdb file and then output a new pdb file with >> HELIX/SHEET records. I have a model for which pymol fails to produce >> correct secondary structure. DSSP and STRIDE identify the secondary >> structure correctly but I'd need to convert their output myself to >> either pdb header or pymol script. So I wonder maybe something like >> that already exists. >> >> Gracias, >> >> Ed >> >> >> >> >> -- >> "I'd jump in myself, if I weren't so good at whistling." >> Julian, King of Lemurs
