Dear Paul,
Thanks for your reply.
Because I have some code in ~/.coot related to the graphic, when I ran
coot in "--no-graphic" mode, coot would crash. If I delete the ~/.coot
file, coot will be ok at "no-graphic" mode.
Another question:
Many functions in coot, such as "refine-zone" or "refine-auto-range",
have a parameter called "altconf", which is a string, but what's the
meaning and function of "altconf"? Does it mean "alternative
conformation"? And what kind of string will be used as correct argument
in these functions?
Thanks for your help.
Best wishes,
Q. Cai
On 11/23/2012 07:32 PM, Paul Emsley wrote:
On 23/11/12 08:54, Qixu Cai wrote:
I have some problems about coot.
1, How to run the "Extensions --> All molecule --> Stepped refine" at
"no-graphic" mode of coot?
(let ((imol (read-pdb "coot-download/3rso.pdb"))
(imol-map (make-and-draw-map "coot-download/r3rso-refmac.mtz"
"FWT" "PHWT" "" 0 0)))
(map (lambda (chain) (fit-chain imol chain)) (chain-ids imol)))
2, Are all of the extensions in coot the scheme/python scripts? If
yes, where the script files store at?
All and more, I think. They are in coot-top-dir/share/coot/python
2, And is there any option to prevent coot auto-loading ~/.coot file?
No. Why would you want to do that?
