Dear Paul,

Sorry to bother you again.

In the scheme script you provided, it seems that the "imol-refinement-map" is not set. Is it necessary to add this code: "(set-imol-refinement-map imol-map)" to the script?

Thanks for your reply.

Best wishes,

Q. Cai


On 11/23/2012 07:32 PM, Paul Emsley wrote:
On 23/11/12 08:54, Qixu Cai wrote:


I have some problems about coot.
1, How to run the "Extensions --> All molecule --> Stepped refine" at "no-graphic" mode of coot?

(let ((imol (read-pdb "coot-download/3rso.pdb"))
(imol-map (make-and-draw-map "coot-download/r3rso-refmac.mtz" "FWT" "PHWT" "" 0 0)))
  (map (lambda (chain) (fit-chain imol chain)) (chain-ids imol)))


2, Are all of the extensions in coot the scheme/python scripts? If yes, where the script files store at?

All and more, I think.  They are in coot-top-dir/share/coot/python


2, And is there any option to prevent coot auto-loading ~/.coot file?

No.  Why would you want to do that?

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