The last time I tried the pdbset renumber command because of issues with insertion codes in certain programs, it failed to also renumber the LINK, SSBOND & CISPEP records. Needless to say, thanking god (or even God) was not my first thought! (more along the lines of "why can't software developers stick to the agreed standards?").
I haven't tried it with the latest version, maybe it's fixed now. -- Ian On 5 December 2012 07:58, Francois Berenger <beren...@riken.jp> wrote: > Especially the renumber command that changes > residue insertion codes into an increment of > the impacted residue numbers. > > Regards, > F. >