Hi Supratim, The clashscore gives the relative number of clashes, not their severity. This makes it difficult to see what your specific problem is. Sever clashes (with large overlaps) are usually the result of errors in your model and need individual attention. Light bumps can usually be solved by optimizing the refinement parameters. Overrestraining bonds and angles can cause a lot of clashes.
Cheers, Robbie > -----Original Message----- > From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of > supratim dey > Sent: Wednesday, January 23, 2013 09:47 > To: CCP4BB@JISCMAIL.AC.UK > Subject: [ccp4bb] Hi clashscore > > Hi > > I am refining my 2 angstrom strucutre using phenix windows based software. > After many refinements my clashscore is not at all reducing and showing a > value of 12. Can anybody suggest how to reduce the clashscore. Is there any > technique to do it. Or i have to deal with each individual clashes mentioned in > the list manually ? > > Supratim
