Dear Chen,
you can find lsqkab and Topp in ccp4 : coordinates utility and superpose
molecule (if you use the GUI).
Hope to help you.
Nicolas
Le 14/03/13 21:53, Chen Zhao a écrit :
Dear all,
I am now struggling to align two 3D RNA structures. I know there are a
bunch of web servers, but they either just generated a pdb file with a
single "aligned" structure, or they left the ligand out.
Does any of you have some recommendations?
Alternatively, is there some software that can calculate the
transformation matrix between the coordinates in 2 pdb files? Then I
could add the ligand back by myself. I suspect that Matlab is able to
do this, but I would save it as the last resort.
Thank you so much!
Best,
Chen
