Dear Chen you can use the Matrix Copy command in pymol to align maps. Check the pymol wiki for details and an example how to use: http://pymolwiki.org/index.php/Matrix_copy.
Best regards Florian Date: Thu, 21 Mar 2013 23:29:31 -0400 From: Chen Zhao <[email protected]> Subject: Map Alignment Dear all, Does anybody know some softwares for aligning electron density maps? I tried transforming map by SQL model fit extension in COOT, which turned out to be not working: the map it transformed is the one supposed to be fixed. If I switch the moving model with the reference model, I only got some error messages. I also tried the "Superpose maps" utility in PHENIX, however, since they are nucleic acid structures, it seems that the sequences cannot be recognized. Thank you very much! Best, Chen ------------------------------------------------------------- Dr. Florian Brückner Laboratory of Biomolecular Research (LBR) OFLG/102 Paul Scherrer Institut CH-5232 Villigen PSI Switzerland Tel.: +41-(0)56-310-2332 Email: [email protected]
