No. :-)

When you are a reviewer for structural papers in journals (I do this work 
sometimes), and when you see an article that has (in this example) Tom's 
structure in it, but he and/or his mentor is not an author, then you call the 
editor and tell them "you may have a problem". I realize that the case may not 
be closed with that statement because the manuscript could indeed be totally 
legitimate and genuine, but it would be a signal in my mind to watch for. A 
"friend" could not just run with the data and publish. A competing group could 
take advantage and get ahead in their project inexpensively (provided that the 
posted data are what you think they are). But that is sort of the point of 
publishing result (I must remember to leave my idealism at home tomorrow). 

Our old approach is to keep a lid on all your data until the paper is 
published. Although it is hard to imagine, there could be a mechanism by which 
you make all your data public, immediately when you get it and this public 
record shows who "owns" it. 

The advantage (in my mind) of such a system would be that you would also make 
public the data that does not make sense to you (it does not fit your 
scientific model) and this could (and has) lead to great discoveries.  The 
disadvantage to the method is that you will sometimes post experiments that are 
just completely wrong (you did not measure what you said you measured) and this 
might make you look "dumb" (not really, this happens all the time; a favorite 
saying is 'we all make mistakes, we just make sure they don't leave the room'). 
And furthermore, you would finally have a "journal of unpublishable data", 
where all the experiments that we should not have done for one reason or 
another reside and can act as a warning what not to do in the future.

It is possible that I am socialist. In the US that is not a good thing, but I 
don't worry about it.

Furthermore, teaching/learning is a concern. More and more places no longer 
have the resources or the patience to teach or learn crystallography. I once 
heard a friend say something along these lines: people who did not learn 
crystallography are now teaching the next generation. As proof for that, he 
explained that experiments are done at synchrotrons that clearly show that not 
the beamline is broken, but the operator does not understand the concepts and 
therefore the data collected are not useful. In my world I see crystallography 
as a tool, and no  longer as a goal all by itself (it was a goal when I was a 
graduate student). I am frequently concerned that protein crystallography will 
go the way of "small molecule crystallography": a few places provide this 
service and as an experimentalist you don't much worry about how they do it. Of 
course, until it becomes super-easy to produce high-quality protein and 
crystals, this won't happen.  

Mark

With apologies to Tom, I don't have a stop-button, Raji is right about that. 


 

 

 

-----Original Message-----
From: vellieux <[email protected]>
To: CCP4BB <[email protected]>
Sent: Thu, Mar 28, 2013 1:54 am
Subject: Re: [ccp4bb] delete subject


              
Hello,
      
      I stayed away from this thread until now - the major reason being      
that I was fitting snugly under my quilt.
      
      However I feel compelled to react now: placing your data in a      public 
repository (thereby "proving" that you did the work) also      means that a 
"colleague", "friend" or whatever can and will      publish your work for you. 
Once your work has been published you      cannot publish it again, you did the 
work and the "colleague",      "friend" or whatever has in fact appropriated 
your work.
      
      In the world of dreams I was living in until a few moments ago (it      
was night time), this is perhaps the way we should act. In the      real world 
we live in, even your "colleague" upstairs will publish      your work if he / 
she has a chance to do it because by doing so he      / she will improve his / 
her career while ensuring that yours      doesn't take off.
      
      Fred.
      
      On 28/03/13 01:34, [email protected] wrote:
    
    
Earlier today, I thought this and did            not write it. It is a slightly 
different              theme on your suggestion:
              
              I hear  there are now              (but have not seen examples 
of)  "journals" (web sites) where you do exactly                what Tom did: 
you put your data there,                  which "proves" that you               
       did the work (first) and you do not worry about                      the 
fact that you are making it public before                      formal 
publication, because making                        data public is the reason 
why you got the data                        in the first place. And nobody can 
claim to have                        done the work, because everybody knows 
that                        someone else was first - the web site is "proof".   
                     The results are not                        peer-reviewed 
of course (even though, in the                        case of CCP4, things are  
                        inherently peer-reviewed to some extent, that           
               is what he asked us to do).  And I hear that there are now 
journals                                  that will accept references to such 
web sites.
                                    
                                    Freely sharing                              
      unpublished data on a public forum might well be the                      
                future, even if in our corner of science this is not            
                                  yet commonplace. 
          
          The pivotal point to Tom is that              he can learn from the 
suggestions that have been made. I              hope he will. I actually hope 
that he will follow up on              the suggestions (privately               
   maybe).  Unlike some, I do not feel that it was bad to find a big file in my 
inbox, this is                    what "move to" is for. I      think my 
reaction was "ouch, he did not want to do        what he just did and it cannot 
be undone". But maybe this is not true. There is definitely            value in 
sharing preliminary data, especially for junior people.                  To 
have such a function as part of CCP4 might be a                  very good 
suggestion, but I agree with                    you that perhaps it should not 
land                      in its full glory                          in 
everyone's mailbox.
                  
                  Mark
                        
 
        
        
 
        
      
    
-- 
Fred. Vellieux (B.Sc., Ph.D., hdr)
ouvrier de la recherche
IBS / ELMA
41 rue Jules Horowitz
F-38027 Grenoble Cedex 01
Tel: +33 438789605
Fax: +33 438785494
  
 

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