Looks like a typo to me: if you change the CRYST space group record from 
P212121 to P21212, as the paper says it is, the packing problem goes away.

++++++++++++++++++++++++++++++++++++++++++

Phoebe A. Rice
Dept. of Biochemistry & Molecular Biology
The University of Chicago

773 834 1723; [email protected]
http://bmb.bsd.uchicago.edu/Faculty_and_Research/

http://www.rsc.org/shop/books/2008/9780854042722.asp

________________________________________
From: CCP4 bulletin board [[email protected]] on behalf of Michel Fodje 
[[email protected]]
Sent: Friday, April 12, 2013 2:17 PM
To: [email protected]
Subject: Re: [ccp4bb] Puzzling Structure

By the way, you will need to show symmetry atoms to see the problem.

>-----Original Message-----
>From: CCP4 bulletin board [mailto:[email protected]] On Behalf Of
>Michel Fodje
>Sent: April-12-13 1:14 PM
>To: [email protected]
>Subject: [ccp4bb] Puzzling Structure
>
>Has anyone else noticed a problem with the structure  of the N-terminal
>capsid domain of HIV-2  PDB 2wlv.
>
>Load it up to in coot and navigate to residue B118.
>
>
>
>/Michel.

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