Wenzong,
You may want to look at rosetta's design modules.
Pete
Wenzong Li wrote:
I want to build the loop based on a computer screen against my peptide.
Thanks
Wenzong
----- Original Message -----
From: "Joel Tyndall" <[email protected]>
To: "Wenzong Li" <[email protected]>, [email protected]
Sent: Monday, April 22, 2013 6:10:09 PM
Subject: RE: [ccp4bb] Modelling Software for beta turn design
Dear Wenzong,
Could you provide a bit more details please? Do you simply require some
visualisation tool e.g. pymol to superimpose your turn mimic on your
protein/peptide structure or are you looking for more indepth modelling to say
identify new scaffolds to build amino acid sidechains onto based on an insilico
screen against your peptide? The latter requires more high end software
Cheers
Joel
-----Original Message-----
From: CCP4 bulletin board [mailto:[email protected]] On Behalf Of Wenzong Li
Sent: Monday, 22 April 2013 3:48 p.m.
To: [email protected]
Subject: [ccp4bb] Modelling Software for beta turn design
Dear All,
I want to use modelling software to design a tight beta turn replacing a loop
between two beta strands. Can anyone suggest a program to do this sort of
modelling?
Thank you
Wenzong
