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Dear Arthur Glasfeld,

to add to Ethan's comment, you can use molauto to generate an input
script for molscript from a PDB-file. Molscript generates the Raster3D
format input file where you can easily add the slab.

All files are text files and easily modified.

Best,
Tim

On 09/05/2013 10:30 PM, Arthur Glasfeld wrote:
> I am hoping to create some images of protein cross-sections where
> the atoms are depicted as spheres, and the spheres that are "cut"
> by the slab are shown as solids with the same color as the surface.
> An example of what I'm after can be found here:
> 
> people.reed.edu/~glasfeld/xsection.jpg
> 
> Does anyone know of any software that can produce similar images?
> 
> 
> Thanks,
> 
> Arthur Glasfeld Reed College Portland, OR
> 

- -- 
- --
Dr Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen

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