Thanx to all Your suggestions really worked and solved my problem.
regards Faisal On Fri, Sep 27, 2013 at 2:08 AM, Parthasarathy Sampathkumar < spart...@gmail.com> wrote: > Hi Faisal, > > you could run dssp2pdb by James Stroud ( > http://www.jamesstroud.com/software/dssp2pdb/ ) to convert dssp output > into PDB readable format as part of the header. When you open resultant PDB > in PyMOL, secondary structure as defined by dssp would be displayed. > > OR > > one could also define secondary structure in PyMOL manually (see at the > end of this link: > http://pymol.sourceforge.net/newman/user/S0260cartoons.html) > > HTH, > Partha > > > On Thu, Sep 26, 2013 at 4:02 PM, Faisal Tarique > <faisaltari...@gmail.com>wrote: > >> >> Dear all >> >> Sorry for the off topic question. >> >> My protein has few G310 helices. It is clearly visible through STRIDE or >> DSSP, but when i open the structure in PYMOL it didnt show it. Other >> visualization graphics like CHIMERA and VMD are able to pick few of them >> but not all the G310 helices..For manuscript preparation i have drawn the >> topology diagram taking the output from STRIDE and DSSP while the overall >> 3D structure is from PYMOL..Will it be O.K to show some helices missing >> from the output of pymol while they are present in the toplogy diagrma ? or >> the reviewer will raise the issue? hope you are able to understand what i >> mean to say. >> >> Please suggest me >> >> -- >> Regards >> >> Faisal >> School of Life Sciences >> JNU >> > > -- Regards Faisal School of Life Sciences JNU
