-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Dear Faisal,
none of the secondary structure prediction programs are perfect (although dssp is pretty good). This means you should always check the predictions yourself, at least at the boundaries of helices and beta-strands and then fine-tune the graphics programs. Best, Tim On 09/26/2013 10:02 PM, Faisal Tarique wrote: > Dear all > > Sorry for the off topic question. > > My protein has few G310 helices. It is clearly visible through > STRIDE or DSSP, but when i open the structure in PYMOL it didnt > show it. Other visualization graphics like CHIMERA and VMD are > able to pick few of them but not all the G310 helices..For > manuscript preparation i have drawn the topology diagram taking the > output from STRIDE and DSSP while the overall 3D structure is from > PYMOL..Will it be O.K to show some helices missing from the output > of pymol while they are present in the toplogy diagrma ? or the > reviewer will raise the issue? hope you are able to understand what > i mean to say. > > Please suggest me > - -- Dr Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen GPG Key ID = A46BEE1A -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.14 (GNU/Linux) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/ iD8DBQFSRKTKUxlJ7aRr7hoRAllFAJ0Sr7afo0Aqr2CgC2NttSnvpSLczgCg1zSg lHem+ve2eguHUlEHx+TgEQo= =734N -----END PGP SIGNATURE-----
