Hello,
you can try Nucplot. http://www.ebi.ac.uk/thornton-srv/software/NUCPLOT/
Very usefull and tunnable to find and show dsDNA/protein complex.
Hope to help.
Nicolas
Le 16/10/13 21:23, Eike Schulz a écrit :
Hello everyone,
I would like to display the interactions of a protein dsDNA complex in
a simplified 2D plot, similar to what LIGPLOT does for protein ligand
interactions. In many articles you find interactions displayed in such
a way but as far as I know those are "hand-made". In my experience
LIGPLOT itself is suboptimal if there are too many interactions to
display …
Thanks a lot in advance for your suggestions.
Eike
