Hi, NUCPLOT is good. You could also try:
http://utdallas.edu/~hnam/software.php#NuProPlot Sid -------------------------------------------- Dr K S Sidhu Department of Biochemistry 1/61 Henry Wellcome Building Lancaster Road Leicester LE1 9HN Tel: 0116 229 7237 On 16 Oct 2013, at 20:35, Nicolas Foos <nicolas.f...@afmb.univ-mrs.fr> wrote: > Hello, > you can try Nucplot. http://www.ebi.ac.uk/thornton-srv/software/NUCPLOT/ > > Very usefull and tunnable to find and show dsDNA/protein complex. > > Hope to help. > > Nicolas > > Le 16/10/13 21:23, Eike Schulz a écrit : >> Hello everyone, >> >> I would like to display the interactions of a protein dsDNA complex in >> a simplified 2D plot, similar to what LIGPLOT does for protein ligand >> interactions. In many articles you find interactions displayed in such >> a way but as far as I know those are "hand-made". In my experience >> LIGPLOT itself is suboptimal if there are too many interactions to >> display … >> >> Thanks a lot in advance for your suggestions. >> >> Eike >> >>
