Hi Dilip the numbering can be given for the top and the bottom sequence only in ESPRIPT you enter the command to produce these in the SPECIAL COMMANDS AND CHARACTERS BOX. You only get this box on the server input page if you select the ADV version in the header - this is the ADVANCED version of the input page. The relevant commands start with Y for the top numbering and Z for the bottom numbering so in the box you enter (say):
Y D 1-1000 Z D 1-1000 as separate lines which are understood as Y - give top numbering D - make it black * (B is blue, R is red - there is a guide alongside the box to the colour codes) 1-1000 - number the range 1 to 1000 (or what ever you want... I guess you can change colour for ranges within the sequence) Notice you cannot change the order of the sequences in the MSA in ESPRIPT - I usually do it manually if I want a particular sequence at the top and bottom. Hope this helps all the best Martyn (hmmm well that is 'Dubh' in Gaidhlig...) ________________________________ From: Dilip Badjugar <[email protected]> To: [email protected] Sent: Saturday, 1 February 2014, 5:49 Subject: [ccp4bb] MSA with starting amino acid numbers Dear users, I know one server for having the secondary structure over MSA i.e. Espript. But I want to incorporate the staring amino acid for protein. I could not find this option in the tutorial. Is it the post editing is the only way to add the amino acid numbers or there are other server which allow me to do so? Thanking you in advance. DCB -- Mr.Dilip C. Badgujar, Senior Research Fellow, ACTREC, Tata Memorial Center, Sector-22, Kharghar, Navi Mumbai. Pin-410210
