Hi Martyn, Thank you very much for you suggestions, it worked out for me. But, if I have multiple sequences in alignment, how should I go in that case?
Thanking you in advance DCB On Tue, Feb 4, 2014 at 12:14 AM, MARTYN SYMMONS < [email protected]> wrote: > Hi Dilip > the numbering can be given for the top and the bottom sequence only in > ESPRIPT > you enter the command to produce these in the SPECIAL COMMANDS AND > CHARACTERS BOX. You only get this box on the server input page if you > select the ADV version in the header - this is the ADVANCED version of > the input page. > The relevant commands start with Y for the top numbering and Z for the > bottom numbering > so in the box you enter (say): > > Y D 1-1000 > Z D 1-1000 > > as separate lines > which are understood as > Y - give top numbering > D - make it black * (B is blue, R is red - there is a guide alongside > the box to the colour codes) > 1-1000 - number the range 1 to 1000 (or what ever you want... I guess > you can change colour for ranges within the sequence) > > Notice you cannot change the order of the sequences in the MSA in ESPRIPT > - I usually do it manually if I want a particular sequence at the top and > bottom. > > Hope this helps > all the best > Martyn > > (hmmm well that is 'Dubh' in Gaidhlig...) > ------------------------------ > *From:* Dilip Badjugar <[email protected]> > *To:* [email protected] > *Sent:* Saturday, 1 February 2014, 5:49 > *Subject:* [ccp4bb] MSA with starting amino acid numbers > > Dear users, > > > I know one server for having the secondary structure over MSA i.e. > Espript. But I want to incorporate the staring amino acid for protein. I > could not find this option in the tutorial. Is it the post editing is the > only way to add the amino acid numbers or there are other server which > allow me to do so? > > > Thanking you in advance. > > DCB > > > > > > > > -- > Mr.Dilip C. Badgujar, > Senior Research Fellow, > ACTREC, > Tata Memorial Center, > Sector-22, Kharghar, > Navi Mumbai. > Pin-410210 > > > -- Mr.Dilip C. Badgujar, Senior Research Fellow, ACTREC, Tata Memorial Center, Sector-22, Kharghar, Navi Mumbai. Pin-410210
