If you "refine crystal mosaicity" (I assume there is a way to do that in the gui) then scalepack prints out a single value for the crystal (search the logfile for mosaicity) eab
On 05/16/2014 12:07 PM, hongshi WANG wrote:
Dear all, Thanks for all your reply and useful comment on this. Harry, You are right. I think there are individual mosaicity value corresponding to each image from scalepack. Clearly, we can get either average or range for report. best, Hongshi On Fri, May 16, 2014 at 2:26 AM, Harry Powell <ha...@mrc-lmb.cam.ac.uk <mailto:ha...@mrc-lmb.cam.ac.uk>> wrote: Hi I'm sure that a real HKL or Denzo/Scalepack expert will correct me, but my recollection is that you don't use any of the values from Denzo, but the value from Scalepack (see http://www.hkl-xray.com/sites/default/files/HKL2000manual/chapter3/step14-1.htm, for example). On 16 May 2014, at 00:26, hongshi WANG wrote:Hello everyone, I am gonna report the mosaicity of my data set as required by the journal. I processed the data using HKL2000. So I checked the denzo log file. I found many different mosaicity values. The first one is default input (0.3), the rest are corresponding to specific images. I think the mosaicity value required should be an overall value or averaged value. Could you please let me know how I can get it. Or some other software can determine it. I really appreciate your help and response! HongshiHarry -- ** note change of address ** Dr Harry Powell, MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge Biomedical Campus, Cambridge CB2 0QH Chairman of European Crystallographic Association SIG9 (Crystallographic Computing)
