Hi, I guess Airlie only replied to Eleanor off-line. This is a problem that Isabel Uson had already reported to us. It’s fixed in the current version of Phaser, which is in the pipeline to be released through the CCP4 update mechanism.
Best wishes, Randy Read On 20 May 2014, at 16:53, jie liu <[email protected]> wrote: > Dear Eleanor > > I've been getting this error for a while. Switching back to ccp4-6.3 would > solve the problem. I guess it's a bug of version 6.4. > > Best > > Jie > ----- Original Message ----- > From: Eleanor Dodson > To: [email protected] > Sent: Tuesday, May 20, 2014 5:26 AM > Subject: [ccp4bb] odd phaser failure > > I should be sending thids to the phaser team I guess, but maybe there is an > easy fix.. > > This is the end of the log file.. > Sg I222 or I212121 > > > Scoring 500 randomly sampled orientations and translations > Spreading calculation onto 2 threads. > Generating Statistics for TF SET #1 of 2 > 0% 100% > |===============================================================| DONE > > Mean Score (Sigma): -18.84 (17.72) > > > SET #1 of 2 TRIAL #1 of 245 > --------------------------- > Search Euler = 99.1 82.9 249.8, Ensemble = ensemble1 > > Doing Fast Translation Function FFT... > Done > > Helix is perpendicular to two-fold: point exclusions applied > > <B><FONT COLOR="#FF8800"> > $TEXT:Warning: $$ Baubles Markup $$ > ------------------------------------------------------------------------------------- > UNHANDLED ERROR: cctbx Error: site_symmetry: min_distance_sym_equiv too large. > ------------------------------------------------------------------------------------- > $$ > > > -------------------- > EXIT STATUS: FAILURE > -------------------- > > CPU Time: 0 days 0 hrs 0 mins 28.27 secs ( 28.27 secs) > Finished: Mon May 19 11:44:52 2014 > > </pre> ------ Randy J. Read Department of Haematology, University of Cambridge Cambridge Institute for Medical Research Tel: + 44 1223 336500 Wellcome Trust/MRC Building Fax: + 44 1223 336827 Hills Road E-mail: [email protected] Cambridge CB2 0XY, U.K. www-structmed.cimr.cam.ac.uk
