Hi Scott Our mails crossed: you worked it out yourself a microsecond before I did!
Cheers -- Ian On 20 October 2014 14:54, Scott Horowitz <[email protected]> wrote: > Please ignore my incredibly dumb last email… autocomplete had me putting > in .pdb files, which obviously won't work. > > Scott > > On Mon, Oct 20, 2014 at 9:47 AM, Scott Horowitz <[email protected]> > wrote: > >> Hi all, >> >> I tried using mapsig for the first time, and I got multiple errors (text >> pasted at bottom). This is on mac os x 10.8.5, and the CCP4 install is >> 6.4.0. I followed these instructions to be able to use CCP4 programs at the >> command line: >> >> >> http://plested.wordpress.com/2012/10/31/run-ccp4-programs-from-the-command-line-on-mac-osx/ >> >> http://ccp4wiki.org/~ccp4wiki/wiki/index.php?title=How_to_run_CCP4_programs_from_the_command_line >> >> I have also tried the csh version as well, with the same results. Any >> advice would be greatly appreciated. This is my first time attempting to >> use CCP4 without the GUI, so if there's additional setup necessary, that >> would be great info to know. >> >> Thanks, >> Scott >> >> mapsig MAPIN H96LA28I_6pt5superI.pdb MAPIN2 H96LQ17I10_6pt5superI.pdb >> TYPE RATIO MAPOUT test.map >> <B><FONT COLOR="#FF0000"><!--SUMMARY_BEGIN--> >> <pre> >> >> ############################################################### >> ############################################################### >> ############################################################### >> ### CCP4 6.4: MAPSIG version 6.4 : ## >> ############################################################### >> User: horowsah Run date: 20/10/2014 Run time: 09:06:01 >> >> >> Please reference: Collaborative Computational Project, Number 4. 1994. >> "The CCP4 Suite: Programs for Protein Crystallography". Acta Cryst. D50, >> 760-763. >> as well as any specific reference in the program write-up. >> >> <!--SUMMARY_END--></FONT></B> >> >> >> ############################################# >> # TRANSLATION FUNCTION MAP SIGNAL ANALYSIS. # >> ############################################# >> >> >> BE WARNED THAT THIS PROGRAM ASSUMES PERIODIC MAP BOUNDARIES, >> (I.E. THE LEFT-HAND EDGE ABUTS ONTO THE RIGHT-HAND EDGE) AND >> THEREFORE MAY NOT LOCATE PEAKS AT THE EDGES OF THE MAP >> CORRECTLY IN OTHER CASES. IN SUCH CASES THE MAP SHOULD BE >> EXPANDED IN ONE OR MORE DIRECTIONS TO MAKE IT PERIODIC IN ALL >> DIRECTIONS. >> <B><FONT COLOR="#FF0000"><!--SUMMARY_BEGIN--> >> <html> <!-- CCP4 HTML LOGFILE --> >> <hr> >> <!--SUMMARY_END--></FONT></B> >> >>>>>> CCP4 library signal ccp4_map:No associated header (Error) >> raised in ccp4_cmap_open <<<<<< >> >>>>>> CCP4 library signal ccp4_map:Cannot open file (Error) >> raised in MRDHDR <<<<<< >> mapsig: Error in opening input map file. >> mapsig: Error in opening input map file. >> Times: User: 0.0s System: 0.0s Elapsed: 0:00 >> </pre> >> </html> >> <!--SUMMARY_END--></FONT></B> >> >> >> -- >> Scott Horowitz, Ph.D. >> Research Associate >> Howard Hughes Medical Institute >> >> University of Michigan >> Department of Molecular, Cellular, and Developmental Biology >> Bardwell lab >> 830 N. University Ave, Room 4007 >> Ann Arbor, MI 48109 >> phone: 734-647-6683 >> fax: 734-615-4226 >> >> >> >> -- >> Scott Horowitz, Ph.D. >> Research Associate >> Howard Hughes Medical Institute >> >> University of Michigan >> Department of Molecular, Cellular, and Developmental Biology >> Bardwell lab >> 830 N. University Ave, Room 4007 >> Ann Arbor, MI 48109 >> phone: 734-647-6683 >> fax: 734-615-4226 >> > > > > -- > Scott Horowitz, Ph.D. > Research Associate > Howard Hughes Medical Institute > > University of Michigan > Department of Molecular, Cellular, and Developmental Biology > Bardwell lab > 830 N. University Ave, Room 4007 > Ann Arbor, MI 48109 > phone: 734-647-6683 > fax: 734-615-4226 >
