Dear ccp4bb Community ,i hope this email finds you well, i am trying to do add 
Zink and Copper to my Superoxid dismuase Enzyme by Coot , i encountered two 
problems.1- after adding Zink and copper by place atom at pointer  << other <<< 
 writing ZN OR CU then running Refmac5 , both atom is turned to water 2- i 
traied to  added  atom and merge the atoms with coordinate file out side the 
coot. the atoms are added but i see red patches arround them. i also added 
calcium instead then i replaced them bz editing the PDB file.3- the Rfactor 16 
and R free is 22.1  so my questionhow can i add zink and copper  in right way. 
second what is the red patches mean?thank you in advance Amr

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