Deart Tim and Kamel, Thank you for your valuable advice. As Tim pointed out, the Shelx2map worked perfectly fine, and these are indeed very useful tools for anyone who is moving the map from the Shelx to pymol or CCP4.
Yes, i did try the COOT exported map extension to .ccp4, but it did not work for me. I do not know why. However, the exporting segmented map did the required job and can be easily open into the PYMOL. In addition, Shelx2map did a great job as you can now make a single map file for making the anomalous map for whole pdb in just one step. Thank you for the help and time. Appu On 1 March 2017 at 07:19, Kamel El Omari <[email protected]> wrote: > Hi Appu, > > Did you change the file extension of the exported map extension to .ccp4 > (instead of .map)? That worked for me. > Cheers > Kamel > > -----Original Message----- > From: CCP4 bulletin board [mailto:[email protected]] On Behalf Of > Paul Emsley > Sent: 28 February 2017 22:57 > To: ccp4bb > Subject: Re: [ccp4bb] ANODE anomalous map in pymol > > On 28/02/2017 22:54, Appu kumar wrote: > > Hi, > > I Already did that in COOT, but PYMOL does not read it in map format. > > Pymol fail to show mesh in isomesh command. > > I confess that I don't know how PyMOL works. Perhaps Export Map Fragment > will do what you need. > > Paul. > > -- > This e-mail and any attachments may contain confidential, copyright and or > privileged material, and are for the use of the intended addressee only. If > you are not the intended addressee or an authorised recipient of the > addressee please notify us of receipt by returning the e-mail and do not > use, copy, retain, distribute or disclose the information in or attached to > the e-mail. > Any opinions expressed within this e-mail are those of the individual and > not necessarily of Diamond Light Source Ltd. > Diamond Light Source Ltd. cannot guarantee that this e-mail or any > attachments are free from viruses and we cannot accept liability for any > damage which you may sustain as a result of software viruses which may be > transmitted in or with the message. > Diamond Light Source Limited (company no. 4375679). Registered in England > and Wales with its registered office at Diamond House, Harwell Science and > Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom >
