Dear All
We would like to analyze a protein molecule, which has two
chains. Both the chains are structurally identical and have
high sequence similarity. But both the chains have tendency to
form different binding pockets with different ligands.
In PDB, the chain A has five structures crystallized with
different ligands, and chain B crystallized with seventy (70)
unique ligand molecules. In total we have 75 structures, and
the protein secondary structure is highly similar.
In this case, is there any software or online server which
will helps us to analyse the protein-ligand interactions all
together and map the interactions to sequence?
We would appreciate your time and kind suggestions that
will help us to analyse the protein-ligand interactions.
Thank you
With regards
Abdul Ajees
|
smime.p7s
Description: S/MIME Cryptographic Signature
