Shijun
You can ask all the questions you like about Phenix on PhenixBB. However,
to answer your question, you can set all peptides to trans using
apply_all_trans=True
or more specific control using
apply_cis_trans_specification {
cis_trans_mod = cis *trans
residue_selection = None
}
to any number of peptides.
Cheers
Nigel
---
Nigel W. Moriarty
Building 33R0349, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
Berkeley, CA 94720-8235
Phone : 510-486-5709 Email : [email protected]
Fax : 510-486-5909 Web : CCI.LBL.gov
On Thu, Mar 1, 2018 at 10:58 PM, 张士军 <[email protected]> wrote:
> Dear all
>
> I am refining a structure which has cis-Pro and trans-Pro, the tans-Pro
> is gone when I set the "threshold degrees for cis-peptide " from default 45
> to 65, but still has cis-Pro. While no significant change when I set it to
> 15. My question is how to set in phenix refinement to clear the Pro
> residues in cis- or trans- conformations.
>
> Best Regards
>
> shijun
>
