Dear Sayli
Here are some options from Table 10.1 of this book chapter
https://link.springer.com/chapter/10.1007/978-94-024-1069-3_10
cons-PPISP
Uses sequence profiles and solvent accessibility for residues and their
neighbours
http://pipe.scs.fsu.edu/ppisp.html
Zhou and Shan (2001
<https://link.springer.com/chapter/10.1007/978-94-024-1069-3_10#CR153>)
meta-PPISP
Metaserver using cons-PPISP, PINUP and Promate predictions
http://pipe.scs.fsu.edu/meta-ppisp.html
Qin and Zhou (2007
<https://link.springer.com/chapter/10.1007/978-94-024-1069-3_10#CR110>)
CPORT
Consensus prediction from six different methods
http://haddock.science.uu.nl/services/CPORT
de Vries and Bonvin (2011
<https://link.springer.com/chapter/10.1007/978-94-024-1069-3_10#CR30>)
PRISE
Atomic composition, residue type and solvent exposure of a central
surface residue plus its neighbours
http://prise.cs.iastate.edu/index.py
Jordan et al. (2012
<https://link.springer.com/chapter/10.1007/978-94-024-1069-3_10#CR57>)
VORFFIP
Considers a variety of structural, energetic, evolutionary and
crystallographic parameters
http://www.bioinsilico.org/VORFFIP
Segura et al. (2011
<https://link.springer.com/chapter/10.1007/978-94-024-1069-3_10#CR124>)
i
I don't know if they are all still functional: unhappily there tends to
be quite a high turnover of such servers
Best wishes
Daniel
On 02/03/18 07:47, Sayli Dalal wrote:
Dear all,
Can anyone help me with a web server or method for prediction of
interfaces for protein-protein interaction?
Thanks and best regards,
Sayli Dalal
Post-Doctoral Fellow
Dept. of Biophysics
NIMHANS
--
Dr Daniel John Rigden Tel:(+44) 151 795 4467
Institute of Integrative Biology FAX:(+44) 151 795 4406
Room 101, Biosciences Building
University of Liverpool http://pcwww.liverpool.ac.uk/~drigden/
Crown St.,
Liverpool L69 7ZB, U.K.
