Dear Sayli, I have used cluspro in past:
https://cluspro.bu.edu/publications.php Kozakov D, Hall DR, Xia B, Porter KA, Padhorny D, Yueh C, Beglov D, Vajda S. The ClusPro web server for protein-protein docking. *Nature Protocols.*2017 Feb;12(2):255-278 Best, Dipak On Fri, Mar 2, 2018 at 3:28 AM, Daniel Rigden <drig...@liverpool.ac.uk> wrote: > Dear Sayli > > Here are some options from Table 10.1 of this book chapter > > https://link.springer.com/chapter/10.1007/978-94-024-1069-3_10 > cons-PPISP > > Uses sequence profiles and solvent accessibility for residues and their > neighbours > > http://pipe.scs.fsu.edu/ppisp.html > > Zhou and Shan (2001 > <https://link.springer.com/chapter/10.1007/978-94-024-1069-3_10#CR153>) > > meta-PPISP > > Metaserver using cons-PPISP, PINUP and Promate predictions > > http://pipe.scs.fsu.edu/meta-ppisp.html > > Qin and Zhou (2007 > <https://link.springer.com/chapter/10.1007/978-94-024-1069-3_10#CR110>) > > CPORT > > Consensus prediction from six different methods > > http://haddock.science.uu.nl/services/CPORT > > de Vries and Bonvin (2011 > <https://link.springer.com/chapter/10.1007/978-94-024-1069-3_10#CR30>) > > PRISE > > Atomic composition, residue type and solvent exposure of a central surface > residue plus its neighbours > > http://prise.cs.iastate.edu/index.py > > Jordan et al. (2012 > <https://link.springer.com/chapter/10.1007/978-94-024-1069-3_10#CR57>) > > VORFFIP > > Considers a variety of structural, energetic, evolutionary and > crystallographic parameters > > http://www.bioinsilico.org/VORFFIP > > Segura et al. (2011 > <https://link.springer.com/chapter/10.1007/978-94-024-1069-3_10#CR124>) > > > i > > > I don't know if they are all still functional: unhappily there tends to be > quite a high turnover of such servers > > Best wishes > > Daniel > > > On 02/03/18 07:47, Sayli Dalal wrote: > > Dear all, > > Can anyone help me with a web server or method for prediction of > interfaces for protein-protein interaction? > > Thanks and best regards, > > Sayli Dalal > Post-Doctoral Fellow > Dept. of Biophysics > NIMHANS > > > > > -- > Dr Daniel John Rigden Tel:(+44) 151 795 4467 > <+44%20151%20795%204467> > Institute of Integrative Biology FAX:(+44) 151 795 4406 > <+44%20151%20795%204406> > Room 101, Biosciences Building > University of Liverpool http://pcwww.liverpool.ac.uk/~drigden/ > Crown St., > Liverpool L69 7ZB, U.K. > > -- Dr. Dipak N. Patil Department of Neuroscience The Scripps Research Institute 130 Scripps Way, 3C2 Jupiter, Florida 33458
