Hi Board Members, I need to draw the solvent accessible surface representation figure for a cation channel pore from the channel coordinates. The Hole program and the documentation is already handy to obtain the 2D-plot (pore radius vs channel coordinate) and the coloured dot surface but is limiting for a publishable figure. Here is what I did I used the HOLE programs sph_process and qpt_conv to obtain the dot surface file as mentioned in http://www.holeprogram.org/doc/index.html#_plotting_a_2d_graph_of_pore_radius_vs_channel_coordinate which I sourced onto VMD. I was unable to get rid off the dots which appear more than certain radius limit. I could not control these in sph_process either. Could anyone suggest me the standard way or fine steps to circumvent this ?
Ashok Nayak Post-Doctoral Fellow, Department of Physiology and Biophysics VCU Medical Centre,1101 E Marshall ST, Richmond,VA USA ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1
