On 22/01/19 20:01, Ashok Nayak wrote: > > I need to draw the solvent accessible surface representation figure > for a cation channel pore from the channel coordinates. The Hole > program and the documentation is already handy to obtain the 2D-plot > (pore radius vs channel coordinate) and the coloured dot surface but > is limiting for a publishable figure.
FYI, Coot has an implementation of HOLE https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/web/screenshots/HOLE-example.png which produces a dots file with entries like # x y z r g b hexcol -0.64576 13.65208 5.07769 0.57820 0.86240 0.20800 #93db35 -0.64576 13.65208 5.07769 0.57820 0.86240 0.20800 #93db35 -0.64576 13.65208 5.07769 0.57820 0.86240 0.20800 #93db35 -0.64576 13.65208 5.07769 0.57820 0.86240 0.20800 #93db35 -0.64576 13.65208 5.07769 0.57820 0.86240 0.20800 #93db35 which you can then display in your favourite graphics program, filtering out the points that the wrong colour. Regards, Paul. ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1
