Well, trade secret means exactly what it says. We were equally unable to
extort it from the suppliers.

MS fragment search as suggested might work. 

 

Best, BR 

 

From: CCP4 bulletin board <[email protected]> On Behalf Of Jorg
Stetefeld
Sent: Monday, September 9, 2019 00:02
To: [email protected]
Subject: [ccp4bb] Secrets of ZYMIT

 

Hi everyone, 

 

this is Joerg Stetefeld. 

 

I would like to approach the community in a peculiar case of a specific
proteolytic cleavage during crystallization attempts.

Performing several crystallization screens we figured out that ZYMIT
(https://www.ipcol.com/cleaners/zymit-low-foam) is the reason for a highly
specific, but undesireable cleavage of protein components in our setups.
Most remarkably, the cleavage site of our crystallisation target is not
described in any protease database, and is highly inaccessible.

 

 

According to a publication by Naschberger et al, 2014
(doi:10.1107/S2053230X14026053) the authors very nicely describe the
phenomenon. They also describe a very elegant protease removal protocol,
which works in our hands very well. 

At this point, however, I would like to know what is “behind” ZYMIT?
Naschberger et al say “Zymit contains an unspecified‘protease enzyme’ as a
trade secret ( <http://www.ipcol.com/pdfs/Zymit_msds.pdf)>
http://www.ipcol.com/pdfs/Zymit_msds.pdf)”.

 

Does anyone has more insight into the secrets of ZYMIT? Our attempts to
contact several vendors here in Canada/ abroad failed and a further
characterisation of its nature would help us to understand this particular
phenomenon of proteolytic cleavage.

 

 

Thank you very much in advance- Your advise is appreciated. 

 

js 

 

 

 

 

Jörg Stetefeld

 

https://stetefeldlab.ca/

 

 

 

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