I think this is part of the problem.
https://pymolwiki.org/index.php/Normalize_ccp4_maps

El lun., 30 de sep. de 2019 a la(s) 10:09, Chris Fage ([email protected])
escribió:

> Hi Paul,
>
> After exporting the maps from Coot, they are directly comparable in Pymol.
> That's quite a convenient feature I was never aware of. Thanks!
>
> Yes, I was comparing the map from FFT in Coot and PyMOL.
>
> Best,
> Chris
>
>
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> On Mon, Sep 30, 2019 at 3:04 PM Paul Emsley <[email protected]>
> wrote:
>
>> On 30/09/2019 13:00, Chris Fage wrote:
>> > Dear Paul, Herman, Robbie, and Santosh,
>> >
>> >
>> > My version of Pymol doesn't support loading of mtz files. I think it's
>> > only in the incentive version.
>> >
>> > Paul wrote: "No need to do this - just export the map (or the map
>> > fragment)." I'm not sure how to do this without going through FFT!
>>
>>
>> File -> Export Map...
>>
>>
>> >
>> > But when I generate a new set of maps with F1=FWT and PHI=PHWT and
>> > load them into Pymol, they are still not comparable to those in Coot.
>> > Again, the maps for ligands 1 and 2 in Pymol look about the same.
>>
>>
>> Are you comparing the map from FFT in Coot and PyMOL?
>>
>>
>> Paul.
>>
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