Dear Murpholino, Yes, I think you're right. For now, directly exporting my maps from Coot is the most efficient solution. The normalization commands will certainly be helpful to me and other users in the future, though. Thanks!
Best, Chris <http://www.avg.com/email-signature?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail> Virus-free. www.avg.com <http://www.avg.com/email-signature?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail> <#DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2> On Mon, Sep 30, 2019 at 9:02 PM Murpholino Peligro <[email protected]> wrote: > I think this is part of the problem. > https://pymolwiki.org/index.php/Normalize_ccp4_maps > > El lun., 30 de sep. de 2019 a la(s) 10:09, Chris Fage ([email protected]) > escribió: > >> Hi Paul, >> >> After exporting the maps from Coot, they are directly comparable in >> Pymol. That's quite a convenient feature I was never aware of. Thanks! >> >> Yes, I was comparing the map from FFT in Coot and PyMOL. >> >> Best, >> Chris >> >> >> <http://www.avg.com/email-signature?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail> >> Virus-free. >> www.avg.com >> <http://www.avg.com/email-signature?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail> >> <#m_-60911564517643226_m_-6662908832285936499_DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2> >> >> On Mon, Sep 30, 2019 at 3:04 PM Paul Emsley <[email protected]> >> wrote: >> >>> On 30/09/2019 13:00, Chris Fage wrote: >>> > Dear Paul, Herman, Robbie, and Santosh, >>> > >>> > >>> > My version of Pymol doesn't support loading of mtz files. I think it's >>> > only in the incentive version. >>> > >>> > Paul wrote: "No need to do this - just export the map (or the map >>> > fragment)." I'm not sure how to do this without going through FFT! >>> >>> >>> File -> Export Map... >>> >>> >>> > >>> > But when I generate a new set of maps with F1=FWT and PHI=PHWT and >>> > load them into Pymol, they are still not comparable to those in Coot. >>> > Again, the maps for ligands 1 and 2 in Pymol look about the same. >>> >>> >>> Are you comparing the map from FFT in Coot and PyMOL? >>> >>> >>> Paul. >>> >>> ######################################################################## >>> >>> To unsubscribe from the CCP4BB list, click the following link: >>> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 >>> >> >> ------------------------------ >> >> To unsubscribe from the CCP4BB list, click the following link: >> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 >> > ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1
