Hi Tommi, Arcimboldo is a good program for that - see http://scripts.iucr.org/cgi-bin/paper?cb5097
HTH Kay On Mon, 7 Oct 2019 21:33:44 +0000, Kajander, Tommi A <[email protected]> wrote: >Hello, > >We have a bit tricky case of coiled coil protein with good data (2.05Å) for >dimeric coiled coil (dimer in AU) - looks like AMPLE might be a way >to solve such cases, if you know other good programs please suggest (Better >yet if there is a clear how-to manual) > >Some technical tips on usage for generation of fragments for AMPLE would be of >help, not completely on top of that… (running the QUARK server, the real >sequence is bit over 200 aa so not sure what is the best approach here? >Rosetta? any how-to for that.. well i am running Robetta fragments too). > >with AMPLE can I do this with the online server or better run locally (need >Rosetta installed I take it?) > >Suppose I could try Rosetta-MR also, but to my recollection that requires some >kind of a phaser hit first to be improved, and i dont think I am there. > >Thanks for any comments, > >Best, >Tommi > > > > >######################################################################## > >To unsubscribe from the CCP4BB list, click the following link: >https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1
