Dear Paul (both),

Thanks a lot! Now it worked!

The Cys is at the active site/ binding pocked of a designer enzyme, which 
actually originally was drafted into the scaffold of a carbohydrate binding 
enzyme.

Best wishes,
Joël

Joël Bloch
Postdoctoral fellow
Group Prof. Locher
Institute of Molecular Biology and Biophysics
ETH Zurich, HPK G18
Otto-Stern-Weg 5<x-apple-data-detectors://1/0>
CH-8093 Zürich, Switzerland<x-apple-data-detectors://1/0>
phone: +41 ( 0 ) 44 63 - 36839<tel:44%2063%20-%2036839>
e-mail : [email protected]<mailto:[email protected]>

On 12 Mar 2020, at 11:10, Paul Emsley <[email protected]> wrote:

On 12/03/2020 09:14, Joël Bloch wrote:
Is there any way in Coot 0.8.9.2 to remove/hide the red trapezoids that are 
indicating planar bonds?
I couldn’t find anything on that, neither in the manual nor FAQ.

(Good for you for reading the documentation)

The red trapezoids represent cis peptides that are in front of a residue that 
is not a proline. They are quite rare (but less so in carbohydrate binding 
proteins (why should that be? is that what you have?)).

Calculate -> Scripting -> Python
set_draw_cis_peptide_markups(0)

Paul.

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