> > I thought that some of the list members may be interested in the paper, > titled "DSSR-enabled innovative schematics of 3D nucleic acid structures > with PyMOL", recently published in _Nucleic Acids Research_ ( > https://doi.org/10.1093/nar/gkz1222).
*Sorry* about the wrong link to nar/gkz1222 -- I was reading that interesting paper on U•A-U-rich RNA triple helix. The correct URL to the DSSR-PyMOL NAR paper is: https://doi.org/10.1093/nar/gkaa426 Best regards, Xiang-Jun -- Xiang-Jun Lu (Ph.D.) Email: [email protected] Web: http://x3dna.org/ Forum: http://forum.x3dna.org/ On Sat, May 23, 2020 at 1:32 PM Xiang-Jun Lu <[email protected]> wrote: > I thought that some of the list members may be interested in the paper, > titled "DSSR-enabled innovative schematics of 3D nucleic acid structures > with PyMOL", recently published in _Nucleic Acids Research_ ( > https://doi.org/10.1093/nar/gkz1222). Among other things, DSSR can > dramatically simplify the depiction of G-quadruplexes by automatically > detecting G-tetrads and treating them as large square blocks. > > The web application interface (http://skmatic.x3dna.org/) also provides > pre-calculated schematics and meta information of nucleic-acid-containing > structures in the PDB. Here are some examples: > > * http://skmatic.x3dna.org/pdb/2lx1 > * http://skmatic.x3dna.org/pdb/2grb > * http://skmatic.x3dna.org/pdb/6vu1 > * http://skmatic.x3dna.org/pdb_entries # 12 random entries > * http://skmatic.x3dna.org/pdb_entries/recent-week > * http://skmatic.x3dna.org/pdb_entries/recent-month > > The supplemental PDF (http://skmatic.x3dna.org/gkaa426-supp.pdf) has been > written to serve as a practical guide, with complete and reproducible > examples. > > Best regards, > > Xiang-Jun > > -- > Xiang-Jun Lu (Ph.D.) > Email: [email protected] > Web: http://x3dna.org/ > Forum: http://forum.x3dna.org/ > ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
