Dear Yong, you could use freely available Chimera.Use Tools->Structure Editing-> Dock prep. in order to add missing side chains to your protein. Another option - Protein preparation tool from Schrodinger Suite. However, it is non-free.
сб, 23 мая 2020 г. в 21:19, Yong Tang <[email protected]>: > Dear all, is there a way to "automatically" patch up the missing atoms in > the residues that otherwise are properly defined in a PDB entry. For > example, an Arginine is defined as Arginine but only has the beta carbon on > the side chain. > > In Coot I could use the Extensions/Modeling/Residues with Missing Atoms to > identify these residues and then go down the list to "mutate" them one by > one by hand. Is there anything more efficient? I could also use the > Calculate/Mutate Residue Range but this inevitably changes the "good" > residue side chains also. > > Any tip is much appreciated, -yong > >> > ------------------------------ > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 > -- Evgenii Osipov Laboratory for Biocrystallography, Department of Pharmaceutical Sciences, KU Leuven O&N2 ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
