Hi Kelvin, well fft as single program is kind of not longer supported as is not ccp4i. In i2 internally, as well in communication with mg or coot, everything is done using map coefficients. Their are two options: First via i2: Use the unusual map coefficients Task and choose not to compare maps, but to generate the map coefficients plus a map (button is in Advanced tab) the standard grid parameters can be changed, but are actually optimized already. Second just save the map out of Coot (Export map)
To avoid redundancy, the old fft task was discontinued. i2 works with coefficients, which generates smaller files and Coot provides all the functions to generate the map and is its own gui. Hope that explains a bit why things are how they are now. Cheers Christian On Tue, Jul 7, 2020 at 1:56 PM Lau Kelvin <[email protected]> wrote: > Hi Christian, > > > > I was in particular looking for the fft program (I couldn’t find that > using the method you described) just to convert an mtz into a .map. Before > in version 7.0 I could just browse all programs, now it seems like I cannot > do that (other than using the filter, and some seem to be missing) > > > > At the end I just used mtz2map in phenix. > > > > -- > Kelvin Lau > > https://people.epfl.ch/kelvin.lau > > > Protein production and structure core facility - PTPSP > EPFL SV PTECH PTPSP > AI 2146 (Bâtiment AI) > Station 19 > CH-1015 Lausanne > Switzerland > Email: [email protected] <[email protected]> > Phone: +41 21 69 30267 <+41%2021%2069%C2%A030267> > > If unreachable: +41 21 69 34494 <+41%2021%2069%C2%A030267> > > > > > > On 06.07.20, 13:34, "Christian Roth" <[email protected]> wrote: > > > > Hi Kelvin, > > not quite sure if I understand you correctly, but if you press the Task > Manager button you get on the right sight a list of topics (import data, > Molecular Replacemnt etc.) each point can be open up like a file tree to > see all programs or pipelines available. You can search with the search > field (Filter) on top for specific program names. > > Does that help? > > > > Cheers > > Christian > > > > On Mon, Jul 6, 2020 at 1:15 PM Lau Kelvin <[email protected]> wrote: > > Hello, > > > > I am looking for a way to find the list of programs accessible using the > new 7.1 CCP4I2 interface? Is this still possible or do I have to revert > back to version 7.0? > > > > Best regards, > > > > Kelvin > > > > -- > Kelvin Lau > > https://people.epfl.ch/kelvin.lau > > > Protein production and structure core facility - PTPSP > EPFL SV PTECH PTPSP > AI 2146 (Bâtiment AI) > Station 19 > CH-1015 Lausanne > Switzerland > Email: [email protected] <[email protected]> > Phone: +41 21 69 30267 <+41%2021%2069%C2%A030267> > > If unreachable: +41 21 69 34494 <+41%2021%2069%C2%A030267> > > > > > ------------------------------ > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
