Dear Kelvin, the command 'ls $CBIN' lists the majority of CCP4 programs on your system. This probably even works under Windows 10, since the powershell acts like a linux/unix shell.
Best regards, Tim On Tue, 7 Jul 2020 16:00:18 +0000 Lau Kelvin <kelvin....@epfl.ch> wrote: > Ah I see! Great I can run it that way > > And yes, Eleanor, after I realized that list was gone, I was > panicking that there are some random things I used to do with those > programs would no longer be possible. Good to know that the command > line versions are still there in the 7.1 distro. > > Best, > > Kelvin > > -- > Kelvin Lau > https://people.epfl.ch/kelvin.lau > > Protein production and structure core facility - PTPSP > EPFL SV PTECH PTPSP > AI 2146 (Bâtiment AI) > Station 19 > CH-1015 Lausanne > Switzerland > Email: kelvin....@epfl.ch<mailto:kelvin....@epfl.ch> > Phone: +41 21 69 30267<tel:+41%2021%2069%C2%A030267> > If unreachable: +41 21 69 34494<tel:+41%2021%2069%C2%A030267> > > > On 07.07.20, 15:51, "CCP4 bulletin board on behalf of Christian Roth" > <CCP4BB@JISCMAIL.AC.UK<mailto:CCP4BB@JISCMAIL.AC.UK> on behalf of > christianroth...@gmail.com<mailto:christianroth...@gmail.com>> wrote: > > ....yes Eleanor is right. command line still works.:-) > fft is also in 7.1 distribution. > > > > On Tue, Jul 7, 2020 at 3:43 PM Eleanor Dodson > <eleanor.dod...@york.ac.uk<mailto:eleanor.dod...@york.ac.uk>> wrote: > Oh Lau - how I miss that list! But if you just run fft online it is > still distributed..wombat:Downloads eleanor$ > > > fft hklin .... mapout .... > > LABIN FP= and so on.. > > > On Tue, 7 Jul 2020 at 14:22, Christian Roth > <christianroth...@gmail.com<mailto:christianroth...@gmail.com>> > wrote: Hi Kelvin, well fft as single program is kind of not longer > supported as is not ccp4i. In i2 internally, as well in communication > with mg or coot, everything is done using map coefficients. Their are > two options: First via i2: Use the unusual map coefficients Task and > choose not to compare maps, but to generate the map coefficients plus > a map (button is in Advanced tab) the standard grid parameters can be > changed, but are actually optimized already. Second just save the map > out of Coot (Export map) > > To avoid redundancy, the old fft task was discontinued. i2 works with > coefficients, which generates smaller files and Coot provides all the > functions to generate the map and is its own gui. > > Hope that explains a bit why things are how they are now. > > Cheers > Christian > > On Tue, Jul 7, 2020 at 1:56 PM Lau Kelvin > <kelvin....@epfl.ch<mailto:kelvin....@epfl.ch>> wrote: Hi Christian, > > I was in particular looking for the fft program (I couldn’t find that > using the method you described) just to convert an mtz into a .map. > Before in version 7.0 I could just browse all programs, now it seems > like I cannot do that (other than using the filter, and some seem to > be missing) > > At the end I just used mtz2map in phenix. > > -- > Kelvin Lau > https://people.epfl.ch/kelvin.lau > > Protein production and structure core facility - PTPSP > EPFL SV PTECH PTPSP > AI 2146 (Bâtiment AI) > Station 19 > CH-1015 Lausanne > Switzerland > Email: kelvin....@epfl.ch<mailto:kelvin....@epfl.ch> > Phone: +41 21 69 30267<tel:+41%2021%2069%C2%A030267> > If unreachable: +41 21 69 34494<tel:+41%2021%2069%C2%A030267> > > > On 06.07.20, 13:34, "Christian Roth" > <christianroth...@gmail.com<mailto:christianroth...@gmail.com>> wrote: > > Hi Kelvin, > not quite sure if I understand you correctly, but if you press the > Task Manager button you get on the right sight a list of topics > (import data, Molecular Replacemnt etc.) each point can be open up > like a file tree to see all programs or pipelines available. You can > search with the search field (Filter) on top for specific program > names. Does that help? > > Cheers > Christian > > On Mon, Jul 6, 2020 at 1:15 PM Lau Kelvin > <kelvin....@epfl.ch<mailto:kelvin....@epfl.ch>> wrote: Hello, > > I am looking for a way to find the list of programs accessible using > the new 7.1 CCP4I2 interface? Is this still possible or do I have to > revert back to version 7.0? > > Best regards, > > Kelvin > > -- > Kelvin Lau > https://people.epfl.ch/kelvin.lau > > Protein production and structure core facility - PTPSP > EPFL SV PTECH PTPSP > AI 2146 (Bâtiment AI) > Station 19 > CH-1015 Lausanne > Switzerland > Email: kelvin....@epfl.ch<mailto:kelvin....@epfl.ch> > Phone: +41 21 69 30267<tel:+41%2021%2069%C2%A030267> > If unreachable: +41 21 69 34494<tel:+41%2021%2069%C2%A030267> > > > ________________________________ > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > ________________________________ > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > ________________________________ > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > ######################################################################## > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a > mailing list hosted by www.jiscmail.ac.uk, terms & conditions are > available at https://www.jiscmail.ac.uk/policyandsecurity/ -- -- Tim Gruene Head of the Centre for X-ray Structure Analysis Faculty of Chemistry University of Vienna Phone: +43-1-4277-70202 GPG Key ID = A46BEE1A ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
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