Dear Expert,
I have a trouble to fix the lysin modified residue in to the PDB coordinate. 
what i did,I get the KCX(Modified lysin) coordinate from monomer library in 
COOT (0.9) , merge in to the coordinate file , its listed into position 193 
lysin then  run rafmac 5 , its place the residue but as unconnected and produce 
its own number. In the second step I take the kcx coordinate in the text pdb 
file and place into between 192 and 194 and change reside number 193 . Save it. 
Now it can not be read for further refinement.Could you people suggest me how 
to fix it?Would be highly thankful to you.

Best Regards
 ===============================
 Afshan 

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