Dear Randy, Eleanor and Jon,

Thank you for your kind rely. I apologize for about the tutorial files. I 
actually got it from my institution's sever and did not check the link. Thanks 
to Randy we now have the correct link.

To John: 

I did put the correct domain 1 chain A and domain 2 chain B as fixed model but 
it seems domain 2 chain A is extra hard to be added in the third MR.


To Randy:

Your approach solved many questions in my mind on that misplaced domain. I 
tried single job with phaser before but it failed too; at the same time, I 
actually tried to put the domains 1 or domain 3 as the third domain in Molrep 
(also failed). Maybe I should inspect more in the map when putting domain 3. I 
also found the misplaced second domain one was in completely wrong orientation 
that the N-terminus and C-terminus shall be switched.   Although I got quiet 
heave work load this week, I will definitely try your steps later.

I cannot be more grateful for your help, especially there are limited learning 
materials online.


Thanks again.

best,
Lande

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