Dear Xiao,
For public entries in the PDB archive, it is possible to download the
coordinates of the assemblies defined in the PDB entry.
If you visit the page for the entry at PDBe (pdbe.org/5l93) and select
'Downloads' you have the option to download various data, including
mmCIF files containing the full assemblies. In this case, "Assembly 1
(mmCIF; gz)" would give you the full structure.
Kind Regards,
David Armstrong
On 21/05/2021 11:33, Xiao Lei wrote:
Dear Community,
I wonder if there is a way to generate symmetry mates of EM
structures? For example for PDB code 5L93, I tried PISA assembly
server and Pymol to generate assembly (18 chains) but failed because
it is not a crystal structure. I tried to download assembly directly
from RCSB databank but after I opened the downloaded structure in
Pymol, I can only see 3 chains, although the RCSB databank indicates
the assembly should contain 18 chains.
Best wishes and thank you in advance,
Xiao
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David Armstrong
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PDBe
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