Hello, in P21, FFT swaps the axes around so Y will be the slowest changing axis 
i.e. along W in the Patterson, I think.

How many atoms are in your model? Very hard to be sure it's not working as the 
Patterson is so very convoluted with a large model.

Cheers, Jon.C.

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-------- Original Message --------
On 21 Jun 2022, 14:11, fuxingke wrote:

> In ccp4, I can use "Generate Patterson Map" to generate Patterson map in "Map 
> & Mask Utilities". But, I found a serious problem. When I use a set of data 
> with spacegroup P21 and the position of atom is kown, the length of w-axis in 
> the Patterson map is not equal to cell parameters c. What's more, the 
> position of Patterson peaks are also different from the interatomic vectors. 
> The parameter is as below.
> Why the Patterson map is different? How can I avoid this problem?Is there any 
> other better method to calculate the Patterson map?
>
> I'm looking forward to your reply.
>
> Regards
>
> Best wishes,
>
> Fu Xingke
>
> Institute of Physics CAS
>
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