Dear colleagues,
First, I don't want to flood ccp4bb with all the concrete program error
code(s). Therefore a more general description. I can give more details
if needed. To the board or by direct mails to the real experts.
I would like to use the Panndda/PanDEMIC
<https://pandda.bitbucket.io/index.html#> tools within our CCP4
environment (version 8.0.008) but I ran in some Python issues, although
CCP4 patch 8.0.005 claimed various py3 Python fixes for Pandda. Even
more by using the 2to3 <https://docs.python.org/3/library/2to3.html>
Python version converter I found a number of Python3 (syntax and more)
issues in the *main* CCP4 Python3 folder/subfolders at
/ccp4/ccp4-8.0/lib/python3.7/site-packages/
Since my OS (openSuSE Leap 15.4) still comes with both Python version
2.7 and 3.6 and CCP4 now comes (to my knowledge) with 3.7 I am confused
what I have to correct/change to use the Pandda tools. By my error
tracking I'm pretty sure that PATH and PYTHONPATH are directing to the
CCP4 folders, but may be I'm wrong ...
And/or what was changed to the Pandda tools in the 8.0.005 CCP4 patch?
Obviously, they are not working at my site ... :-(
For instance, all Pandda scripts are still coming with a Python3
obsolete program option "-Q" ?!?!
Was my 8.0.005 patch not properly executed? CCP4i teils me nothing.
It is a shame but my Python knowledge is more than limited. Therefore I
ran 2to3 for all Pandda scripts but then main CCP4 Python tools/scripts
showed up, again with some syntax errors (= missing version 2/3
conversion ??) in the code. After also correcting these first 2-3 issues
there were - by executing "pandemic.adp" - still more and more Python
issues appearing...
Now I asked my self, what is wrong with my CCP4 installation? According
to patch 8.0.005 these tools should run !!
And why are there version 3 issues beyond the CCP4 python3.7 folder ??
I'm confused. Any help is highly appreciated.
Best,
Michael
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