Hello All, I just had a very strange experience- I rebooted my linux machine (Ubuntu jammy 7.81.0) and tried to start up Coot and received the following error message:
The program 'coot-bin' received an X Window System error. This probably reflects a bug in the program. The error was 'BadValue (integer parameter out of range for operation)'. (Details: serial 351 error_code 2 request_code 152 minor_code 3) (Note to programmers: normally, X errors are reported asynchronously; that is, you will receive the error a while after causing it. To debug your program, run it with the --sync command line option to change this behavior. You can then get a meaningful backtrace from your debugger if you break on the gdk_x_error() function.) . ------ Coot crashed - trying to diagnose ----- ldd -r on guile gives: linux-vdso.so.1 (0x00007ffd6d0b9000) libguile.so.17 => /opt/xtal/ccp4-8.0/coot_py2/libexec/../lib/libguile.so.17 (0x00007fd113800000) libgmp.so.10 => /opt/xtal/ccp4-8.0/coot_py2/libexec/../lib/libgmp.so.10 (0x00007fd113400000) libcrypt.so.1 => /lib/x86_64-linux-gnu/libcrypt.so.1 (0x00007fd113c6b000) libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007fd113b84000) libltdl.so.7 => /opt/xtal/ccp4-8.0/coot_py2/libexec/../lib/libltdl.so.7 (0x00007fd113000000) libpthread.so.0 => /lib/x86_64-linux-gnu/libpthread.so.0 (0x00007fd113b7d000) libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007fd112c00000) /lib64/ld-linux-x86-64.so.2 (0x00007fd113cbc000) libdl.so.2 => /lib/x86_64-linux-gnu/libdl.so.2 (0x00007fd113b78000) Guile 1.8.8 Copyright (c) 1995, 1996, 1997, 2000, 2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008 Free Software Foundation Guile may be distributed under the terms of the GNU General Public Licence; certain other uses are permitted as well. For details, see the file `COPYING', which is included in the Guile distribution.I There is no warranty, to the extent permitted by law. catching the crash log: Gtk-Message: Failed to load module "gail" Gtk-Message: Failed to load module "atk-bridge" Gtk-Message: Failed to load module "canberra-gtk-module" coot-exe: "/opt/xtal/ccp4-8.0/coot_py2/libexec/coot-bin" /usr/bin/ls -rwxr-xr-x 1 tom tom 9256240 Jun 21 12:54 /opt/xtal/ccp4-8.0/coot_py2/libexec/coot-bin coot-version: /opt/xtal/ccp4-8.0/coot_py2/libexec/coot-bin Builder_info: CCP4, Oxfordshire I tried this both as command line (coot xxx.pdb) and through the CCP4i window and I get the same error message. I also tried with more than one coordinate file (in different directories). I find this strange as I was just finishing up some structures with Coot/ Refmac (everything working fine) and had turned off my machine to take a break for a day, so things were working very recently. I don't remember doing any major updates either... Has anyone else seen this behaviour? cheers, tom ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
