Hi Tommi,

This should be possible with watFinder in prody. It can’t currently focus on 
water molecules between chains but we can add a filter for that.

Best wishes 
James 

> On 6 Nov 2024, at 15:44, Kajander, Tommi A <[email protected]> wrote:
> 
> Is there a something available to automatically analyse/identifiy/quantify 
> bound (“bridging”) water molecules at protein-protein interfaces?  Could not 
> find anyting right away.

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