Presumably DSSP is still available -
https://swift.cmbi.umcn.nl/gv/dssp/
Harry
> On 13 Nov 2024, at 12:18, Marc Graille <[email protected]> wrote:
>
> Dear Vitali,
>
> I used to do it with Stride server.
>
> Stride
> wzw.tum.de
>
>
>
> Hope this helps,
>
> Best wishes,
>
> Marc
>
>
> —
> Marc GRAILLE, PhD
> DR1-CNRS
>
> Head of the team: “Translation and degradation of eukaryotic mRNAs”
>
> Laboratoire de Biologie Structurale de la Cellule (BIOC); UMR7654; CNRS
> ÉCOLE POLYTECHNIQUE
> 91128 PALAISEAU CEDEX
> FRANCE
> 📞: +33 (0)1 69 33 48 90
> https://portail.polytechnique.edu/bioc/en/research/coupling-between-translation-and-mrna-degradation-eukaryotes
>
> Responses to emails are not expected outside of your normal working hours.
>
> <Signature-email.png>
>
>> Le 13 nov. 2024 à 13:14, Vitali James <[email protected]> a écrit :
>>
>> Dear User,
>> Is there any tool that can assign the secondary structure to the sequence
>> of protein in the PDB.
>> In the past I have used a 2Struc: the secondary structure server, but it's
>> not available any more.
>> Is there any easy way to list the sequence and ss below the sequence of
>> provided PDB models.
>> best
>> J. Vitali
>>
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