You might try Stride (http://webclu.bio.wzw.tum.de/stride) or 2Struc ( http://2struc.cryst.bbk.ac.uk; which is not available now but was available some time ago).
Best, Oliviero Il giorno mer 13 nov 2024 alle ore 16:31 Robbie Joosten < [email protected]> ha scritto: > It is, but it is now hosted at https://pdb-redo.eu/dssp. > > It is also in CCP4 as mkdssp (it is a slightly older version). > > Cheers, > Robbie > > > -----Original Message----- > > From: CCP4 bulletin board <[email protected]> On Behalf Of Harry > > Powell > > Sent: Wednesday, November 13, 2024 16:23 > > To: [email protected] > > Subject: Re: [ccp4bb] secondary structure assignment to sequence > > > > Presumably DSSP is still available - > > > > https://swift.cmbi.umcn.nl/gv/dssp/ > > > > Harry > > > > > On 13 Nov 2024, at 12:18, Marc Graille > > <[email protected]> wrote: > > > > > > Dear Vitali, > > > > > > I used to do it with Stride server. > > > > > > Stride > > > wzw.tum.de > > > > > > > > > > > > Hope this helps, > > > > > > Best wishes, > > > > > > Marc > > > > > > > > > — > > > Marc GRAILLE, PhD > > > DR1-CNRS > > > > > > Head of the team: “Translation and degradation of eukaryotic mRNAs” > > > > > > Laboratoire de Biologie Structurale de la Cellule (BIOC); UMR7654; > > > CNRS ÉCOLE POLYTECHNIQUE > > > 91128 PALAISEAU CEDEX > > > FRANCE > > > 📞: +33 (0)1 69 33 48 90 > > > https://portail.polytechnique.edu/bioc/en/research/coupling-between-tr > > > anslation-and-mrna-degradation-eukaryotes > > > > > > Responses to emails are not expected outside of your normal working > > hours. > > > > > > <Signature-email.png> > > > > > >> Le 13 nov. 2024 à 13:14, Vitali James <[email protected]> a écrit > : > > >> > > >> Dear User, > > >> Is there any tool that can assign the secondary structure to the > sequence > > of protein in the PDB. > > >> In the past I have used a 2Struc: the secondary structure server, but > it's > > not available any more. > > >> Is there any easy way to list the sequence and ss below the sequence > of > > provided PDB models. > > >> best > > >> J. Vitali > > >> > > >> To unsubscribe from the CCP4BB list, click the following link: > > >> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > >> > > > > > > > > > To unsubscribe from the CCP4BB list, click the following link: > > > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > > > > > > ############################################################### > > ######### > > > > To unsubscribe from the CCP4BB list, click the following link: > > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > > > This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a > > mailing list hosted by www.jiscmail.ac.uk, terms & conditions are > available at > > https://www.jiscmail.ac.uk/policyandsecurity/ > > ######################################################################## > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a > mailing list hosted by www.jiscmail.ac.uk, terms & conditions are > available at https://www.jiscmail.ac.uk/policyandsecurity/ > ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
