Hi Reshma, Not sure if it’s the specific case but Redditers were very salty about the macOS Tahoe, with it being “half-baked” and giving trouble with softwares.
It may just be the same issue that happened when Catalina came out and some things stopped working. In the meantime, it may be a good idea to rollback or not upgrade (unless it’s forced by the IT department or so). Good luck! Cheers, Nikolas On Thu, 2 Oct 2025 at 12:30, Lakki Reshma < [email protected]> wrote: > Hi Everyone, > > Recently, I updated my system to macOS Tahoe version 26. Coot was running > fine, and for the past 2-3 days, when I try to open it from Phoenix or with > Xquartz terminal, I get the following message - > > INFO:: Reading coordinate file: /opt/coot/share/coot/standard-residues.pdb > PDB file /opt/coot/share/coot/standard-residues.pdb has been read. > Spacegroup: P 1 > The program 'coot-bin' received an X Window System error. > This probably reflects a bug in the program. > The error was 'BadValue (integer parameter out of range for operation)'. > (Details: serial 316 error_code 2 request_code 129 minor_code 2) > (Note to programmers: normally, X errors are reported asynchronously; > that is, you will receive the error a while after causing it. > To debug your program, run it with the --sync command line > option to change this behavior. You can then get a meaningful > backtrace from your debugger if you break on the gdk_x_error() > function.) > bash-3.2$ > > Tried installing new versions of CCP4 (CCP4- version 9) package and also > updated XQuartz to the latest version. > IF anyone else faced similar issues, please let me know how to fix this. > > > Regards, > Reshma. > > > ------------------------------ > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
